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Difference between revisions of "Otu.hierarchy"

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Line 10: Line 10:
  
 
  mothur > otu.hierarchy(list=abrecovery.fn.list, label=0.03-0.35)
 
  mothur > otu.hierarchy(list=abrecovery.fn.list, label=0.03-0.35)
 +
 +
The abrecovery.fn.0.03-0.35.otu.hierarchy output file will look like:
 +
...
 +
AY457705 AY457705
 +
AY457724 AY457724
 +
AY457722 AY457722
 +
AY457703 AY457703
 +
AY457720,AY457728,AY457746,AY457742,AY457781 AY457781 AY457742 AY457720,AY457728,AY457746
 +
AY457713,AY457719 AY457719 AY457713
 +
AY457712 AY457712
 +
AY457681,AY457819,AY457727 AY457727 AY457681,AY457819
 +
AY457697,AY457787 AY457697 AY457787
 +
...

Revision as of 11:25, 29 January 2010

The otu.hierarchy command relates OTUs at different distances



Default settings

A list file and two labels must be inputted for otu.hierarchy to be successful.

mothur > otu.hierarchy(list=abrecovery.fn.list, label=0.03-0.35)

The abrecovery.fn.0.03-0.35.otu.hierarchy output file will look like:

...
AY457705	AY457705	
AY457724	AY457724	
AY457722	AY457722	
AY457703	AY457703	
AY457720,AY457728,AY457746,AY457742,AY457781	AY457781	AY457742	AY457720,AY457728,AY457746	
AY457713,AY457719	AY457719	AY457713	
AY457712	AY457712	
AY457681,AY457819,AY457727	AY457727	AY457681,AY457819	
AY457697,AY457787	AY457697	AY457787	
...