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Difference between revisions of "Mothur v.1.9.0"

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(Bug fixes)
(Options)
Line 7: Line 7:
 
* added more error checking to chimera.seqs to check query to template seqs length
 
* added more error checking to chimera.seqs to check query to template seqs length
 
* added output parameter so you can create a square phylip formatted matrices from dist.seqs and dist.shared
 
* added output parameter so you can create a square phylip formatted matrices from dist.seqs and dist.shared
 +
* added [[parse.list]] command.
  
 
==Bug fixes==
 
==Bug fixes==

Revision as of 12:06, 25 February 2010

Options

  • added output parameter to otu.hierarchy command, options are name and number. name is default. you can output either the names of the sequences in the OTUs or the OTU numbers.
  • added dups parameter to remove.seqs command.
  • add accnos file output to chimera.seqs
  • add a name option to unifrac commands
  • rework the way chimera.seqs processes seqs so only one is read at a time
  • added more error checking to chimera.seqs to check query to template seqs length
  • added output parameter so you can create a square phylip formatted matrices from dist.seqs and dist.shared
  • added parse.list command.

Bug fixes

  • Problem with "../" ==> align.seqs(candidate=wobus.unique.fasta, template=../DataAnalysis/silva.refalign.fasta, processors=2); Segmentation fault
  • fixed bug in merge.files that inserted the eof character in between the merged files
  • fixed bug that could cause a badalloc to occur while reading a sabund file
  • added checking for duplicate sequence names in list files which leads to .missing.group file to be blank.