We will be offering an R workshop December 18-20, 2019. Learn more.

Difference between revisions of "Mothur v.1.8.0"

From mothur
Jump to: navigation, search
Line 11: Line 11:
 
* added list parameter to [[get.seqs]] and [[remove.seqs]] commands.
 
* added list parameter to [[get.seqs]] and [[remove.seqs]] commands.
 
* mothur uses the readline library to allow use of arrow keys and other shortcuts in [[Interactive mode]].
 
* mothur uses the readline library to allow use of arrow keys and other shortcuts in [[Interactive mode]].
 +
* added probs parameter to the [[classify.seqs]] command to shut off bootstrapping with bayesian method.

Revision as of 19:00, 9 December 2009

mothur now allows for comments in fasta files in the following format:

>#=GC_SS_cons
::::::::<<<<<_______>>>>>,{{{{-{{{{{{,{{{{{{{{{-.---{{{-.{{.{.,,...
>FYV22AL02GBAKV
------------------------------------------------.-------.--.-.--...

The sequence =GC_SS_cons is ignored and only FYV22AL02GBAKV is read in.

  • added flip and threshold parameters to align.seqs command.
  • added list parameter to get.seqs and remove.seqs commands.
  • mothur uses the readline library to allow use of arrow keys and other shortcuts in Interactive mode.
  • added probs parameter to the classify.seqs command to shut off bootstrapping with bayesian method.