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Mothur v.1.7.0

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Revision as of 14:21, 2 November 2009 by Westcott (Talk | contribs) (New page: * get.listcount command - Ever wonder after a cluster what sequences are in those bins?? Thanks to a user request, here is the solution. Given a list file, this command will output a ....)

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  • get.listcount command - Ever wonder after a cluster what sequences are in those bins?? Thanks to a user request, here is the solution. Given a list file, this command will output a .otu file for each distance specified containing the bin number and a list of the sequences in that bin.
  • updated read.otu command - you can now use the groups parameter to specify which groups you would like to use. If you provide groups mothur will generate a .rabund file for each group, a .shared file containing only those groups and a new group file containing only the sequences in the groups you specified.
  • hcluster command - clusters distance files of any size. It's slower than the cluster command, which stores the distance in RAM to increase performance, so if you can fit your file in RAM use cluster.