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Mothur v.1.5.0

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Revision as of 13:04, 24 July 2009 by Westcott (Talk | contribs) (Bug fixes)

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Major updates

Minor updates

  • mothur can now read trees that include internal node labels.
  • list.seqs command - reads one of the following file types: fasta, name, group or alignreport file and writes out the names of the sequences found within it.
  • get.seqs command - reads an .accnos file and one of the following file types: fasta, name, group or alignreport file. It outputs a file containing only the sequences in the .accnos file.
  • remove.seqs command - reads an .accnos file and one of the following file types: fasta, name, group or alignreport file. It outputs a file containing the sequences NOT in the .accnos file.
  • system - Allow the user to enter system commands from within mothur.
  • added sorted option to get.rabund command.

Bug fixes

  • fixed windows unable to open file error with filter.seqs.
  • fixed bug with help command.
  • fixed bug with batchfile input.
  • fixed bug that resulted in an infinite loop if user forgot ; in ScriptBatchEngine.
  • fixed bug in venn with 4 groups that gave inflated values.
  • fixed bug with aligner that occurred when template sequence names contained spaces.

Wiki updates