We will be offering mothur and R workshops throughout 2019. Learn more.

Difference between revisions of "Mothur v.1.5.0"

From mothur
Jump to: navigation, search
(Bug fixes)
(Bug fixes)
Line 16: Line 16:
 
* fixed bug that resulted in an infinite loop if user forgot ; in ScriptBatchEngine.
 
* fixed bug that resulted in an infinite loop if user forgot ; in ScriptBatchEngine.
 
* fixed bug in venn with 4 groups that gave inflated values.
 
* fixed bug in venn with 4 groups that gave inflated values.
 +
* fixed bug with aligner that occurred when template sequence names contained spaces.
  
 
==Wiki updates==
 
==Wiki updates==

Revision as of 13:04, 24 July 2009

Major updates

Minor updates

  • mothur can now read trees that include internal node labels.
  • list.seqs command - reads one of the following file types: fasta, name, group or alignreport file and writes out the names of the sequences found within it.
  • get.seqs command - reads an .accnos file and one of the following file types: fasta, name, group or alignreport file. It outputs a file containing only the sequences in the .accnos file.
  • remove.seqs command - reads an .accnos file and one of the following file types: fasta, name, group or alignreport file. It outputs a file containing the sequences NOT in the .accnos file.
  • system - Allow the user to enter system commands from within mothur.
  • added sorted option to get.rabund command.

Bug fixes

  • fixed windows unable to open file error with filter.seqs.
  • fixed bug with help command.
  • fixed bug with batchfile input.
  • fixed bug that resulted in an infinite loop if user forgot ; in ScriptBatchEngine.
  • fixed bug in venn with 4 groups that gave inflated values.
  • fixed bug with aligner that occurred when template sequence names contained spaces.

Wiki updates