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Difference between revisions of "Mothur v.1.5.0"

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(Minor updates)
(Minor updates)
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* get.seqs command - reads an .accnos file and one of the following file types: fasta, name, group or alignreport file. It outputs a file containing only the sequences in the .accnos file.
 
* get.seqs command - reads an .accnos file and one of the following file types: fasta, name, group or alignreport file. It outputs a file containing only the sequences in the .accnos file.
 
* remove.seqs command - reads an .accnos file and one of the following file types: fasta, name, group or alignreport file. It outputs a file containing the sequences NOT in the .accnos file.
 
* remove.seqs command - reads an .accnos file and one of the following file types: fasta, name, group or alignreport file. It outputs a file containing the sequences NOT in the .accnos file.
 +
* system - Allow the user to enter system commands from within mothur.
  
 
==Bug fixes==
 
==Bug fixes==

Revision as of 16:02, 8 July 2009

Major updates

Minor updates

  • mothur can now read trees that include internal node labels.
  • list.seqs command - reads one of the following file types: fasta, name, group or alignreport file and writes out the names of the sequences found within it.
  • get.seqs command - reads an .accnos file and one of the following file types: fasta, name, group or alignreport file. It outputs a file containing only the sequences in the .accnos file.
  • remove.seqs command - reads an .accnos file and one of the following file types: fasta, name, group or alignreport file. It outputs a file containing the sequences NOT in the .accnos file.
  • system - Allow the user to enter system commands from within mothur.

Bug fixes

  • fixed windows unable to open file error with filter.seqs.
  • fixed bug with help command.

Wiki updates