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Difference between revisions of "Mothur v.1.4.0"

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(Bug fixes)
Line 24: Line 24:
 
* fixed help for filter.seqs and align.seqs
 
* fixed help for filter.seqs and align.seqs
 
* fixed bug with deconvolute that double the length of last sequence
 
* fixed bug with deconvolute that double the length of last sequence
 +
* mothur now recognizes TRUE, true, T and t as true for filter.seqs vertical parameter.

Revision as of 12:06, 4 June 2009

Minor updates

  • tree.shared command now allows you to input a phylip-formatted distance file [sw]
  • added "smart" distance recognition on all commands using the label parameter [sw]
  • added ability to omit () on the quit command [sw]


Major updates

  • summary.seqs - output statistics regarding a collection of sequences [pds]
  • screen.seqs - screen sequence, name, and group files based on whether sequences satisfy user-defined criteria [pds]


Calculators

Bug fixes

  • fixed infinite loop if mothur is given a non-existent batchfile [sw]
  • fixed get.group() command. [sw]
  • optimized summary.shared command [sw]
  • ability to use -1 in a distance file to represent infinity [sw]
  • tree.shared command creates trees with root to tip length of 0.5 [sw]
  • fixed bug where deconvolute() would double the length of the last sequence [ps]
  • fixed bug with read.dist for windows users [sw]
  • fixed help for filter.seqs and align.seqs
  • fixed bug with deconvolute that double the length of last sequence
  • mothur now recognizes TRUE, true, T and t as true for filter.seqs vertical parameter.