We will be offering mothur and R workshops throughout 2019. Learn more.

Difference between revisions of "Mothur v.1.3.0"

From mothur
Jump to: navigation, search
Line 8: Line 8:
 
* '''Calculators'''
 
* '''Calculators'''
 
**Shared richness estimator for N≥2; incorporated into calculating 3- and 4-way Venn diagrams when using the Chao-type estimator
 
**Shared richness estimator for N≥2; incorporated into calculating 3- and 4-way Venn diagrams when using the Chao-type estimator
 
+
* tree.shared command
 +
* bootstrap.shared command
 +
* concensus command
  
 
==Bug fixes==
 
==Bug fixes==

Revision as of 19:03, 13 May 2009

Minor updates

Major updates

  • seq.filter - Remove select columns from an alignment by removing any column that has a specific character in it, a minimum base frequency, or a user-supplied filter
  • dist.seqs - Generate pairwise distance matrix in column format
  • Calculators
    • Shared richness estimator for N≥2; incorporated into calculating 3- and 4-way Venn diagrams when using the Chao-type estimator
  • tree.shared command
  • bootstrap.shared command
  • concensus command

Bug fixes

  • Got rid of weird output to screen when running collect.single() or using the npshannon calculator
  • Fixed bug that would not permit freq=1
  • fixed file error with rarefaction.single() and rarefaction.shared()