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Difference between revisions of "Mothur v.1.3.0"

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==Major updates==
 
==Major updates==
 
* [[seq.filter]] - Remove select columns from an alignment by removing any column that has a specific character in it, a minimum base frequency, or a user-supplied filter
 
* [[seq.filter]] - Remove select columns from an alignment by removing any column that has a specific character in it, a minimum base frequency, or a user-supplied filter
* [[seq.distance]] - Generate pairwise distance matrix in column format
+
* [[dist.seqs]] - Generate pairwise distance matrix in column format
 
* '''Calculators'''
 
* '''Calculators'''
 
**Shared richness estimator for N≥2; incorporated into calculating 3- and 4-way Venn diagrams when using the Chao-type estimator
 
**Shared richness estimator for N≥2; incorporated into calculating 3- and 4-way Venn diagrams when using the Chao-type estimator
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* Got rid of weird output to screen when running collect.single() or using the npshannon calculator
 
* Got rid of weird output to screen when running collect.single() or using the npshannon calculator
 
* Fixed bug that would not permit freq=1
 
* Fixed bug that would not permit freq=1
 +
* fixed file error with rarefaction.single() and rarefaction.shared()

Revision as of 19:01, 13 May 2009

Minor updates

Major updates

  • seq.filter - Remove select columns from an alignment by removing any column that has a specific character in it, a minimum base frequency, or a user-supplied filter
  • dist.seqs - Generate pairwise distance matrix in column format
  • Calculators
    • Shared richness estimator for N≥2; incorporated into calculating 3- and 4-way Venn diagrams when using the Chao-type estimator


Bug fixes

  • Got rid of weird output to screen when running collect.single() or using the npshannon calculator
  • Fixed bug that would not permit freq=1
  • fixed file error with rarefaction.single() and rarefaction.shared()