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Difference between revisions of "Mothur v.1.10.0"

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(Feature updates)
(Feature updates)
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* parallelized [[trim.seqs]]
 
* parallelized [[trim.seqs]]
 
* made get.oturep command be made more memory efficient by breaking processing into 2 parts so distance and list files are not in memory at the same time as fasta, name and group files.
 
* made get.oturep command be made more memory efficient by breaking processing into 2 parts so distance and list files are not in memory at the same time as fasta, name and group files.
 +
* added hard parameter to [[cluster]], [[hcluster]] and [[read.dist]] for a hard cutoff (hard=T), where the cutoff is 0.03, not 0.0349, etc.
  
 
==Bug fixes==
 
==Bug fixes==
 
* fixed bug with MPI Enabled version that would cause a malloc error if the number of seqs in your input file did not divide evenly between processes.
 
* fixed bug with MPI Enabled version that would cause a malloc error if the number of seqs in your input file did not divide evenly between processes.

Revision as of 15:47, 3 May 2010

These will be available in the next version of mothur. Stay tuned for a release in May 2010.


New commands

  • added set.logfile command - allows user to set logfile name and/or append the log to an existing file

Feature updates

Bug fixes

  • fixed bug with MPI Enabled version that would cause a malloc error if the number of seqs in your input file did not divide evenly between processes.