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Difference between revisions of "Get.sabund"

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  mothur > get.sabund()
 
  mothur > get.sabund()
  
This series of commands will generate amazon.fn.sabund.  If the list file contains multiple lines and you are only interested in a subset of those line you can use the line or label option:
+
This series of commands will generate amazon.fn.sabund.  If the list file contains multiple lines and you are only interested in a subset of those line you can use the label option:
  
 
  mothur > get.sabund(label=unique-0.03-0.10-0.20)
 
  mothur > get.sabund(label=unique-0.03-0.10-0.20)
  
or
 
 
mothur > get.sabund(lines=1-5-10-20)
 
  
 
[[Category:Commands]]
 
[[Category:Commands]]

Revision as of 14:23, 17 November 2009

The get.sabund command will generate an sabund file based on the OTU data that you have read into mothur. For example, if you read in a list file, get.rabund will generate the corresponding sabund file:

mothur > read.otu(list=amazon.fn.list)
mothur > get.sabund()

This series of commands will generate amazon.fn.sabund. If the list file contains multiple lines and you are only interested in a subset of those line you can use the label option:

mothur > get.sabund(label=unique-0.03-0.10-0.20)