We will be offering an R workshop December 18-20, 2019. Learn more.


From mothur
Revision as of 14:14, 29 March 2018 by Westcott (Talk | contribs) (Revisions)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

The get.group command allows you to get a listing of the different groups available for the multi-sample OTU data that are currently stored in memory. This feature should help in using the group option for other commands. For this tutorial you should download and decompress AmazonData.zip.

Default Options

The shared parameter is required.

mothur > get.group(shared=amazon.an.shared)

This tells you that you have two groups: one for the rainforest sequences and another for the pasture sequences.


  • 1.40.0 - Speed and memory improvements for shared files. #357 , #347