dist.shared kills mothur on win10

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kmitchell
Posts: 501
Joined: Wed Mar 10, 2010 8:19 pm
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dist.shared kills mothur on win10

Post by kmitchell » Thu Aug 24, 2017 1:00 pm

Hi Sarah

found what I think is a bug in the win10 version of mothur 1.39.5. dist.shared kills the executable. Both win10 computers had the same failure.

Code: Select all

Windows version

Running 64Bit Version

mothur v.1.39.5
Last updated: 3/20/2017

by
Patrick D. Schloss

Department of Microbiology & Immunology
University of Michigan
http://www.mothur.org

When using, please cite:
Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41.

Distributed under the GNU General Public License

Type 'help()' for information on the commands that are available

For questions and analysis support, please visit our forum at https://www.mothur.org/forum

Type 'quit()' to exit program
Interactive Mode


mothur > 
dist.shared(shared=fastq/workshop.trim.contigs.good.unique.good.filter.precluster.pick.pick.opti_mcc.shared, calc=braycurtis-jest-thetayc, subsample=10000)

Using 1 processors.
deep.sed.wp1.NA0004270319 contains 8283. Eliminating.
deep.water.wm2.Blitz.H2O.51 contains 10. Eliminating.
0.03
Here got a windows error box saying mothur.exe shut down unexpectedly

westcott
Posts: 1728
Joined: Thu Sep 03, 2009 7:47 am

Re: dist.shared kills mothur on win10

Post by westcott » Tue Aug 29, 2017 1:18 pm

Thanks for reporting this issue. It is the same bug seen here, https://github.com/mothur/mothur/issues/357. It is fixed in version 1.40.0 which will be released later this week.

kmitchell
Posts: 501
Joined: Wed Mar 10, 2010 8:19 pm
Contact:

Re: dist.shared kills mothur on win10

Post by kmitchell » Wed Aug 30, 2017 3:23 pm

great! thanks

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