This is a directory for the files used in the manuscript, "Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform", which is under review by Applied and Environmental Microbiology

Development data (run names correspond to Tables 1 and 2)

  • 121203
  • 121205
  • 121207
  • 130125
  • 130211
  • 130220
  • 130306
  • 130401
  • 130403
  • 130417
  • 130422
  • Reference sequences
  • Stability study runs

  • Without genomes/metagenomes
  • With genomes/metagenomes
  • Metagenomic/Genomic Data

  • Mock community: read 1 read 2
  • Human feces: read 1 read 2
  • C. clostridioforme D4: read 1 read 2
  • C. clostridioforme CIP: read 1 read 2