This is the data file repository for the manuscript, "Modeling healthy, diarrheal, and Clostridium difficile infection status using clinical data and microbiome-based biomarkers" by Alyxandria M. Schubert and colleagues, which is currently submitted to mBio.

  • MIMARKS Spreadsheet contains metadata for all samples included in study
  • Hospital-acquired (cases and diarrheal controls) cohort part 1: sff, oligos
  • Hospital-acquired (cases and diarrheal controls) cohort part 2: sff, oligos
  • Hospital-acquired (cases and diarrheal controls) cohort part 3: sff, oligos
  • Community-acquired (non-diarrheal controls) cohort part 1: sff, oligos
  • Community-acquired (non-diarrheal controls) cohort part 2: sff, oligos




  • This site is maintained by Pat Schloss and Alyxandria Schubert
    © 2013

    Department of Microbiology & Immunology
    The University of Michigan Medical School
    The University of Michigan