Parse.list
From mothur
The parse.list command reads a list file and group file and generates a list file for each group in the groupfile.
Contents |
Default Settings
mothur > parse.list(list=abrecovery.fn.list, group=abrecovery.groups)
Output to the screen looks like:
unique 0.00 0.01 0.02 0.03 0.04 0.05 ... Output File Names: abrecovery.fn.A.list abrecovery.fn.B.list abrecovery.fn.C.list
Options
label
There may only be a couple of lines in your list file that you are interested in. There are two options. You could: (i) manually delete the lines you aren't interested in from your list file; (ii) or use the label option.
mothur > parse.list(list=abrecovery.fn.list, group=abrecovery.groups, label=unique-0.03-0.05-0.10)
In the file abrecovery.fn.A.list you would see something like:
unique 84 AY457831 AY457830 AY457829 AY457828 AY457827 AY457826 ... 0.03 61 AY457783,AY457769,AY457786 AY457829 AY457776,AY457831 AY457754 ... 0.05 53 AY457783,AY457769,AY457786 AY457829 AY457749,AY457776,AY457831 ... 0.10 42 AY457783,AY457769,AY457786 AY457829 AY457813,AY457793,AY457818,AY457785,AY457775,AY457788,AY457815,...
