CDI Microbiome Modeling

This is the data file repository for the manuscript, “Modeling healthy, diarrheal, and Clostridium difficile infection status using clinical data and microbiome-based biomarkers” by Alyxandria M. Schubert and colleagues, which was published in mBio.

  • MIMARKS Spreadsheet contains metadata for all samples included in study
  • Hospital-acquired (cases and diarrheal controls) cohort part 1: sff oligos
  • Hospital-acquired (cases and diarrheal controls) cohort part 2: sff oligos
  • Hospital-acquired (cases and diarrheal controls) cohort part 3: sff oligos
  • Community-acquired (non-diarrheal controls) cohort part 1: sff oligos
  • Community-acquired (non-diarrheal controls) cohort part 2: sff oligos